Software/Tools

Computational suite for studying cell-cell interactions and communication

Computational suite implementing different methods to study cell-cell interactions from expression levels of genes/proteins

Docker container for single-cell analyses

Docker container with a set of tools for single-cell transcriptomic analyses

Metabolic activity from single‑cell and spatial transcriptomics with scCellFie

scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.

Utility for facilitating the use of COBRApy

Tool to facilitate the use of COBRApy and the manipulation of metabolic networks

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