Projects

Research

Summary of my main research topics

Software/Tools

Summary of computational tools I have worked on

Cell-cell interactions define high-order organizations in multicellular organisms, influencing their phenotypes. In this regard, I am interested in helping to understand how CCIs and phenotype are connected, in both a cellular and molecular level.

RNA-seq
single-cell
transcriptomics
tools
cell-cell interactions
cell-cell communication

Software/Tools

Computational suite for studying cell-cell interactions and communication

Computational suite implementing different methods to study cell-cell interactions from expression levels of genes/proteins

Python
RNA-seq
single-cell
transcriptomics
tools
cell-cell interactions
cell-cell communication

Docker container for single-cell analyses

Docker container with a set of tools for single-cell transcriptomic analyses

Docker
RNA-seq
single-cell
transcriptomics
tools

Utility for facilitating the use of COBRApy

Tool to facilitate the use of COBRApy and the manipulation of metabolic networks

Python
COBRApy
flux balance analysis
metabolic modeling